5R9D
PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment S00888c in complex with MAP kinase p38-alpha
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.620, 86.040, 127.640 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.344 - 1.690 |
R-factor | 0.1921 |
Rwork | 0.191 |
R-free | 0.21280 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6so1 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.23) |
Phasing software | REFMAC |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 71.340 | 71.340 | 1.730 |
High resolution limit [Å] | 1.690 | 7.560 | 1.690 |
Rmerge | 0.085 | 0.036 | 1.301 |
Rmeas | 0.093 | 0.040 | 1.417 |
Rpim | 0.036 | 0.016 | 0.555 |
Total number of observations | 368535 | 4562 | 26383 |
Number of reflections | 57067 | ||
<I/σ(I)> | 12.5 | 36.2 | 1.4 |
Completeness [%] | 99.9 | 99.9 | 99.9 |
Redundancy | 6.5 | 6.1 | 6.4 |
CC(1/2) | 0.998 | 0.998 | 0.510 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 291 | 27.5% PEG3350, 0.1 M Bis-Tris propane, pH 6.9, 50 mM ammonium sulfate, 0.2 M 1:1 magnesium chloride:magnesium sulfate, 10% glycerol |