5R5H
PanDDA analysis group deposition -- Crystal Structure of human NUDT22 in complex with N13706a
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-07-03 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.92819 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 49.490, 52.220, 101.480 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 35.950 - 1.790 |
| R-factor | 0.187 |
| Rwork | 0.184 |
| R-free | 0.22980 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5lf9 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.453 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.26) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 35.920 | 35.920 | 1.840 |
| High resolution limit [Å] | 1.790 | 8.010 | 1.790 |
| Rmerge | 0.108 | 0.033 | 1.649 |
| Rmeas | 0.117 | 0.037 | 1.796 |
| Rpim | 0.046 | 0.015 | 0.705 |
| Total number of observations | 163961 | 1929 | 11682 |
| Number of reflections | 25477 | ||
| <I/σ(I)> | 10.2 | 38.3 | 1.1 |
| Completeness [%] | 99.8 | 99.1 | 99.8 |
| Redundancy | 6.4 | 5.6 | 6.3 |
| CC(1/2) | 0.999 | 0.999 | 0.552 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M HEPES pH 7.5, 0.3M sodium/potassium phosphate, 15% PEG Smear High, 20% ethylene glycol |
