5R55
PanDDA analysis group deposition -- Crystal Structure of human NUDT22 in complex with N13369a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.720, 52.370, 101.890 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.620 - 1.480 |
R-factor | 0.1912 |
Rwork | 0.190 |
R-free | 0.21740 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5lf9 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.703 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.26) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.580 | 46.580 | 1.520 |
High resolution limit [Å] | 1.480 | 6.620 | 1.480 |
Rmerge | 0.066 | 0.029 | 1.581 |
Rmeas | 0.071 | 0.032 | 1.729 |
Rpim | 0.028 | 0.013 | 0.690 |
Total number of observations | 293281 | 3434 | 20102 |
Number of reflections | 45159 | ||
<I/σ(I)> | 15.3 | 59.8 | 1.2 |
Completeness [%] | 99.9 | 99.2 | 99.7 |
Redundancy | 6.5 | 5.8 | 6.1 |
CC(1/2) | 0.999 | 0.999 | 0.492 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M HEPES pH 7.5, 0.3M sodium/potassium phosphate, 15% PEG Smear High, 20% ethylene glycol |