5R2D
PanDDA analysis group deposition -- Endothiapepsin in complex with fragment F2X-Entry H11, DMSO-free
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.387, 72.949, 52.834 |
Unit cell angles | 90.00, 109.69, 90.00 |
Refinement procedure
Resolution | 42.733 - 0.919 |
R-factor | 0.1218 |
Rwork | 0.122 |
R-free | 0.12520 |
Structure solution method | FOURIER SYNTHESIS |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC (5.8.0238) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.733 | 50.000 | 0.980 |
High resolution limit [Å] | 0.920 | 2.750 | 0.920 |
Rmerge | 0.047 | 0.031 | 1.831 |
Rmeas | 0.051 | 0.034 | 2.064 |
Total number of observations | 1278981 | ||
Number of reflections | 192682 | 8465 | 16625 |
<I/σ(I)> | 14.72 | 56.97 | 0.55 |
Completeness [%] | 86.0 | 0.992 | 0.46 |
Redundancy | 6.637 | 6.91 | 2.16 |
CC(1/2) | 0.999 | 0.999 | 0.264 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG4000 |