Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5QU5

Domain Swap in the first SH3 domain of human Nck1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2018-04-10
DetectorPSI PILATUS 6M
Wavelength(s)0.99994
Spacegroup nameP 21 21 21
Unit cell lengths40.200, 55.170, 55.230
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.030 - 1.110
R-factor0.1551
Rwork0.152
R-free0.20790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)inhouse model
RMSD bond length0.022
RMSD bond angle2.037
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.03039.0301.130
High resolution limit [Å]1.1004.9201.100
Rmerge0.0770.02913.661
Rmeas0.0830.03114.734
Total number of observations351842
Number of reflections487676433396
<I/σ(I)>8.1641.650.1
Completeness [%]96.499.292.2
Redundancy7.2156.7827.101
CC(1/2)0.9991.000
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52935-20 mg/mL protein in 25mM HEPES\/NaOH pH7.8, 150mM NaCl mixed 60-70% with 40-30% reservoir consisting of 0.1M Bis-Tris/HCl pH5.5, 2M NaCl, 25% PEG3350

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon