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5QU1

Crystal Structure of the monomeric human Nck SH3.1 domain, triclinic, 1.08A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2018-05-14
DetectorPSI PILATUS 6M
Wavelength(s)0.99997
Spacegroup nameP 1
Unit cell lengths23.910, 28.370, 38.560
Unit cell angles87.15, 86.49, 67.04
Refinement procedure
Resolution38.470 - 1.080
R-factor0.1611
Rwork0.159
R-free0.21420
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)inhouse model
RMSD bond length0.012
RMSD bond angle1.543
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0222)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]38.47038.4701.130
High resolution limit [Å]1.1004.9101.100
Rmerge0.0760.0371.022
Rmeas0.1030.0501.406
Total number of observations53364
Number of reflections27558380434
<I/σ(I)>5.4217.910.61
Completeness [%]72.390.715.3
Redundancy1.941.9031.79
CC(1/2)0.9960.9930.354
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52935-20 mg/mL protein in 25mM HEPES\/NaOH pH7.8, 150mM NaCl mixed 60-70% with 40-30% reservoir consisting of 0.1M BIS-TRIS\/HCl pH6.5, 2M Ammonium sulfate

222036

PDB entries from 2024-07-03

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