5QU1
Crystal Structure of the monomeric human Nck SH3.1 domain, triclinic, 1.08A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-14 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.99997 |
Spacegroup name | P 1 |
Unit cell lengths | 23.910, 28.370, 38.560 |
Unit cell angles | 87.15, 86.49, 67.04 |
Refinement procedure
Resolution | 38.470 - 1.080 |
R-factor | 0.1611 |
Rwork | 0.159 |
R-free | 0.21420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.012 |
RMSD bond angle | 1.543 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.470 | 38.470 | 1.130 |
High resolution limit [Å] | 1.100 | 4.910 | 1.100 |
Rmerge | 0.076 | 0.037 | 1.022 |
Rmeas | 0.103 | 0.050 | 1.406 |
Total number of observations | 53364 | ||
Number of reflections | 27558 | 380 | 434 |
<I/σ(I)> | 5.42 | 17.91 | 0.61 |
Completeness [%] | 72.3 | 90.7 | 15.3 |
Redundancy | 1.94 | 1.903 | 1.79 |
CC(1/2) | 0.996 | 0.993 | 0.354 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 5-20 mg/mL protein in 25mM HEPES\/NaOH pH7.8, 150mM NaCl mixed 60-70% with 40-30% reservoir consisting of 0.1M BIS-TRIS\/HCl pH6.5, 2M Ammonium sulfate |