5QSI
PanDDA analysis group deposition -- Crystal Structure of human Brachyury G177D variant in complex with Z933326822
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-12-09 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | H 3 2 |
| Unit cell lengths | 99.660, 99.660, 99.470 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 49.830 - 1.640 |
| R-factor | 0.1913 |
| Rwork | 0.189 |
| R-free | 0.23950 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6f58 |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.570 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.3) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 49.840 | 49.840 | 1.580 |
| High resolution limit [Å] | 1.540 | 6.890 | 1.540 |
| Rmerge | 0.066 | 0.030 | 1.685 |
| Rmeas | 0.070 | 0.032 | 1.836 |
| Rpim | 0.023 | 0.011 | 0.716 |
| Total number of observations | 253291 | 3192 | 13082 |
| Number of reflections | 28206 | ||
| <I/σ(I)> | 13.9 | 46.1 | 1 |
| Completeness [%] | 100.0 | 99.8 | 99.4 |
| Redundancy | 9 | 8.9 | 6.4 |
| CC(1/2) | 0.999 | 0.999 | 0.437 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.1 M SPG pH 7.0, 30 % PEG 1000 |
