5QOA
Group deposition of apo datasets for PANDDA analysis - Crystal Structure of apo EcDsbA after initial refinement (apo_dataset_40)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-04-28 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.95370 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 117.572, 63.482, 74.624 |
Unit cell angles | 90.00, 126.11, 90.00 |
Refinement procedure
Resolution | 34.507 - 1.979 |
R-factor | 0.214 |
Rwork | 0.213 |
R-free | 0.25240 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.228 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.320 | 48.320 | 2.030 |
High resolution limit [Å] | 1.980 | 9.070 | 1.980 |
Rmerge | 0.069 | 0.023 | 0.646 |
Rmeas | 0.079 | 0.026 | 0.746 |
Rpim | 0.039 | 0.013 | 0.368 |
Total number of observations | 127168 | 1276 | 8251 |
Number of reflections | 30885 | 346 | 2071 |
<I/σ(I)> | 10.7 | 33.7 | 1.6 |
Completeness [%] | 99.1 | 98.3 | 94.2 |
Redundancy | 4.1 | 3.7 | 4 |
CC(1/2) | 0.999 | 0.999 | 0.762 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | 11-13% PEG 8000 5-7.5% GLYCEROL 1 MM CUCL2 100 MM SODIUM CACODYLATE |