5QK8
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z1271660837
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-07-29 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 1 |
| Unit cell lengths | 49.270, 59.910, 80.011 |
| Unit cell angles | 79.55, 81.38, 75.74 |
Refinement procedure
| Resolution | 78.200 - 1.710 |
| R-factor | 0.2269 |
| Rwork | 0.225 |
| R-free | 0.26000 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6gru |
| RMSD bond length | 0.019 |
| RMSD bond angle | 1.981 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.1) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 41.420 | 41.420 | 1.750 |
| High resolution limit [Å] | 1.710 | 7.650 | 1.710 |
| Rmerge | 0.026 | 0.016 | 0.416 |
| Rmeas | 0.036 | 0.022 | 0.588 |
| Rpim | 0.026 | 0.016 | 0.416 |
| Total number of observations | 153246 | 1872 | 10747 |
| Number of reflections | 89368 | ||
| <I/σ(I)> | 11.7 | 41.3 | 1.1 |
| Completeness [%] | 95.4 | 97.8 | 94.2 |
| Redundancy | 1.7 | 1.8 | 1.6 |
| CC(1/2) | 0.999 | 0.998 | 0.811 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 33 % PEG4k, 0.2 MgCl2 and 0.1 M Tris |
