5QID
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z1787627869
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-01-29 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | I 4 |
| Unit cell lengths | 97.487, 97.487, 80.388 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 68.930 - 1.450 |
| R-factor | 0.1806 |
| Rwork | 0.180 |
| R-free | 0.19750 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 2nzl |
| RMSD bond length | 0.015 |
| RMSD bond angle | 1.809 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 26.160 | 26.160 | 1.490 |
| High resolution limit [Å] | 1.450 | 6.480 | 1.450 |
| Rmerge | 0.054 | 0.035 | 0.567 |
| Rmeas | 0.059 | 0.038 | 0.662 |
| Rpim | 0.023 | 0.015 | 0.336 |
| Total number of observations | 392437 | 5052 | 18219 |
| Number of reflections | 66577 | ||
| <I/σ(I)> | 17.4 | 50.5 | 2.1 |
| Completeness [%] | 99.9 | 98.6 | 98.7 |
| Redundancy | 5.9 | 6.5 | 3.8 |
| CC(1/2) | 0.999 | 0.999 | 0.782 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.75 | 293 | 0.1M MIB pH 5.75 - 7.0, 27.5-35% PEG1000 |
