5QHC
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with RK4-337
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-09-22 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.97628 |
| Spacegroup name | P 3 2 1 |
| Unit cell lengths | 124.649, 124.649, 41.069 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 108.180 - 2.210 |
| R-factor | 0.1907 |
| Rwork | 0.189 |
| R-free | 0.22820 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5t3p |
| RMSD bond length | 0.016 |
| RMSD bond angle | 1.845 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.940 | 28.940 | 2.270 |
| High resolution limit [Å] | 2.210 | 9.880 | 2.210 |
| Rmerge | 0.054 | 0.022 | 0.474 |
| Rmeas | 0.056 | 0.023 | 0.499 |
| Rpim | 0.017 | 0.007 | 0.155 |
| Total number of observations | 206432 | 2288 | 14238 |
| Number of reflections | 18609 | ||
| <I/σ(I)> | 32.6 | 93.9 | 6 |
| Completeness [%] | 99.9 | 96.1 | 99.3 |
| Redundancy | 11.1 | 10 | 10.2 |
| CC(1/2) | 1.000 | 1.000 | 0.981 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1M bis-tris pH 5.5 -- 0.1M ammonium acetate -- 5%(w/v) PEG10K |
