5QH9
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with PCM-0102716
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-09-07 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 3 2 1 |
| Unit cell lengths | 124.671, 124.671, 41.174 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 107.970 - 1.720 |
| R-factor | 0.1847 |
| Rwork | 0.183 |
| R-free | 0.20580 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5t3p |
| RMSD bond length | 0.012 |
| RMSD bond angle | 1.616 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.980 | 28.980 | 1.760 |
| High resolution limit [Å] | 1.720 | 7.680 | 1.720 |
| Rmerge | 0.042 | 0.017 | 0.796 |
| Rmeas | 0.044 | 0.018 | 0.840 |
| Rpim | 0.014 | 0.006 | 0.265 |
| Total number of observations | 397264 | 4629 | 27296 |
| Number of reflections | 39273 | ||
| <I/σ(I)> | 31.1 | 108.5 | 2.6 |
| Completeness [%] | 99.8 | 98.1 | 98 |
| Redundancy | 10.1 | 9.7 | 9.8 |
| CC(1/2) | 1.000 | 1.000 | 0.830 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1M bis-tris pH 5.5 -- 0.1M ammonium acetate -- 5%(w/v) PEG10K |
