5QGX
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with NUOOA000155
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-05-11 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 3 2 1 |
| Unit cell lengths | 124.150, 124.150, 40.874 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 107.750 - 1.610 |
| R-factor | 0.1978 |
| Rwork | 0.197 |
| R-free | 0.20790 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5t3p |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.467 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.820 | 29.820 | 1.650 |
| High resolution limit [Å] | 1.610 | 7.200 | 1.610 |
| Rmerge | 0.044 | 0.029 | 0.768 |
| Rmeas | 0.047 | 0.030 | 0.805 |
| Rpim | 0.014 | 0.009 | 0.239 |
| Total number of observations | 525617 | 6501 | 37841 |
| Number of reflections | 46985 | ||
| <I/σ(I)> | 27.7 | 85.6 | 2.6 |
| Completeness [%] | 99.9 | 98.7 | 99.1 |
| Redundancy | 11.2 | 11.4 | 11 |
| CC(1/2) | 1.000 | 0.999 | 0.882 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1M bis-tris pH 5.5 -- 0.1M ammonium acetate -- 5%(w/v) PEG10K |
