5QGC
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOOA000650a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 90.041, 90.041, 106.683 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.021 - 1.586 |
R-factor | 0.1845 |
Rwork | 0.183 |
R-free | 0.21060 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.017 |
RMSD bond angle | 1.802 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.954 | 62.954 | 1.680 |
High resolution limit [Å] | 1.590 | 4.750 | 1.590 |
Rmerge | 0.055 | 0.028 | 1.020 |
Rmeas | 0.061 | 0.031 | 1.138 |
Total number of observations | 680164 | ||
Number of reflections | 130856 | 4880 | 20963 |
<I/σ(I)> | 14.1 | 50.23 | 1.29 |
Completeness [%] | 99.8 | 99.9 | 98.9 |
CC(1/2) | 0.999 | 0.999 | 0.509 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 277 | well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol |