5QEM
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_XST00000217b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 89.651, 89.651, 106.437 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 62.725 - 1.754 |
R-factor | 0.191 |
Rwork | 0.190 |
R-free | 0.21560 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.023 |
RMSD bond angle | 1.973 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.726 | 62.726 | 1.860 |
High resolution limit [Å] | 1.750 | 5.240 | 1.750 |
Rmerge | 0.071 | 0.032 | 1.103 |
Rmeas | 0.079 | 0.035 | 1.258 |
Total number of observations | 488419 | ||
Number of reflections | 95866 | 3591 | 15424 |
<I/σ(I)> | 12.3 | 43.84 | 1.09 |
Completeness [%] | 99.9 | 99.9 | 99.7 |
CC(1/2) | 0.999 | 0.999 | 0.506 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 277 | well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol |