5QDQ
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_XST00000847b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 90.043, 90.043, 106.678 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.021 - 1.575 |
R-factor | 0.2062 |
Rwork | 0.205 |
R-free | 0.23010 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.027 |
RMSD bond angle | 2.231 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.953 | 62.953 | 1.670 |
High resolution limit [Å] | 1.570 | 4.710 | 1.570 |
Rmerge | 0.059 | 0.029 | 1.190 |
Rmeas | 0.066 | 0.032 | 1.329 |
Total number of observations | 694603 | ||
Number of reflections | 133861 | 5015 | 21583 |
<I/σ(I)> | 13.12 | 49.02 | 1.02 |
Completeness [%] | 99.9 | 99.9 | 99.6 |
CC(1/2) | 0.999 | 0.999 | 0.615 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 277 | well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol |