5QDJ
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000211a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 89.787, 89.787, 106.539 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.946 - 1.761 |
R-factor | 0.1828 |
Rwork | 0.182 |
R-free | 0.20810 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.021 |
RMSD bond angle | 1.900 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.808 | 62.808 | 1.870 |
High resolution limit [Å] | 1.760 | 5.270 | 1.760 |
Rmerge | 0.095 | 0.037 | 1.082 |
Rmeas | 0.106 | 0.041 | 1.208 |
Total number of observations | 491179 | ||
Number of reflections | 95050 | 3558 | 15329 |
<I/σ(I)> | 11.72 | 38 | 1.56 |
Completeness [%] | 99.9 | 99.8 | 99.7 |
CC(1/2) | 0.998 | 0.998 | 0.502 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 277 | well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol |