5QDH
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000004a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 89.854, 89.854, 106.510 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 62.833 - 1.682 |
R-factor | 0.2379 |
Rwork | 0.237 |
R-free | 0.25730 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.020 |
RMSD bond angle | 1.642 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 77.816 | 77.816 | 1.780 |
High resolution limit [Å] | 1.680 | 5.040 | 1.680 |
Rmerge | 0.132 | 0.057 | 1.270 |
Rmeas | 0.148 | 0.063 | 1.412 |
Total number of observations | 545887 | ||
Number of reflections | 109162 | 4085 | 17718 |
<I/σ(I)> | 9.14 | 32.29 | 1.01 |
Completeness [%] | 99.9 | 100 | 100 |
CC(1/2) | 0.996 | 0.997 | 0.535 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 277 | well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol |