5Q6U
PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand modelled (structure 167)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Detector technology | PIXEL |
Collection date | 2017-04-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.860, 56.830, 114.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.080 - 1.330 |
R-factor | 0.1886 |
Rwork | 0.187 |
R-free | 0.21250 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5aho |
RMSD bond length | 0.026 |
RMSD bond angle | 2.217 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 27.080 | 27.080 | 1.360 |
High resolution limit [Å] | 1.330 | 5.950 | 1.330 |
Rmerge | 0.039 | 0.023 | 1.241 |
Rmeas | 0.042 | 0.025 | 1.396 |
Rpim | 0.017 | 0.010 | 0.631 |
Total number of observations | 487837 | 5866 | 27505 |
Number of reflections | 78731 | ||
<I/σ(I)> | 17.9 | 67.2 | 1.2 |
Completeness [%] | 100.0 | 99 | 100 |
Redundancy | 6.2 | 5.8 | 4.8 |
CC(1/2) | 1.000 | 0.999 | 0.524 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 30% PEG 1000, 0.1M MIB buffer |