Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5Q5K

PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand modelled (structure 121)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Detector technologyPIXEL
Collection date2017-04-11
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.92
Spacegroup nameP 21 21 21
Unit cell lengths51.753, 56.907, 114.964
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution56.860 - 2.810
R-factor0.1863
Rwork0.182
R-free0.27520
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)5aho
RMSD bond length0.010
RMSD bond angle1.419
Data reduction softwareXDS
Data scaling softwareAimless (0.5.31)
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]56.86056.8602.880
High resolution limit [Å]2.81012.5702.810
Rmerge0.4680.1042.718
Rmeas0.5100.1152.951
Rpim0.2000.0471.138
Total number of observations548266564237
Number of reflections8759
<I/σ(I)>5.18.42
Completeness [%]100.099.4100
Redundancy6.35.26.6
CC(1/2)0.9660.9950.535
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP629830% PEG 1000, 0.1M MIB buffer

229183

PDB entries from 2024-12-18

PDB statisticsPDBj update infoContact PDBjnumon