5Q5J
PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand modelled (structure 120)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Detector technology | PIXEL |
| Collection date | 2017-04-11 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.92 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 51.786, 58.102, 114.477 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 57.300 - 2.000 |
| R-factor | 0.2508 |
| Rwork | 0.248 |
| R-free | 0.30050 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5aho |
| RMSD bond length | 0.018 |
| RMSD bond angle | 1.866 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.31) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 57.300 | 58.080 | 1.520 |
| High resolution limit [Å] | 1.480 | 6.620 | 1.480 |
| Rmerge | 0.064 | 0.020 | 1.233 |
| Rmeas | 0.070 | 0.022 | 1.358 |
| Rpim | 0.028 | 0.009 | 0.562 |
| Total number of observations | 361435 | 4568 | 24076 |
| Number of reflections | 58365 | ||
| <I/σ(I)> | 11.6 | 60.4 | 1 |
| Completeness [%] | 99.9 | 100 | 99.9 |
| Redundancy | 6.2 | 6 | 5.7 |
| CC(1/2) | 0.999 | 1.000 | 0.727 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 30% PEG 1000, 0.1M MIB buffer |
