5PY1
PanDDA analysis group deposition -- Crystal Structure of SP100 after initial refinement with no ligand modelled (structure 61)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-04-02 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 127.500, 45.370, 83.120 |
| Unit cell angles | 90.00, 102.23, 90.00 |
Refinement procedure
| Resolution | 38.930 - 1.740 |
| R-factor | 0.1786 |
| Rwork | 0.177 |
| R-free | 0.21460 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 4ptb |
| RMSD bond length | 0.020 |
| RMSD bond angle | 1.842 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 38.930 | 38.930 | 1.790 |
| High resolution limit [Å] | 1.740 | 7.780 | 1.740 |
| Rmerge | 0.071 | 0.029 | 0.676 |
| Rmeas | 0.085 | 0.034 | 0.804 |
| Rpim | 0.045 | 0.018 | 0.430 |
| Total number of observations | 150328 | 1844 | 11399 |
| Number of reflections | 43720 | ||
| <I/σ(I)> | 15.1 | 53.5 | 1.9 |
| Completeness [%] | 91.6 | 94.9 | 93.4 |
| Redundancy | 3.4 | 3.4 | 3.5 |
| CC(1/2) | 0.998 | 0.998 | 0.629 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.1M MES pH 6.1 -- 20% PEG20K |
