5PXD
PanDDA analysis group deposition -- Crystal Structure of SP100 after initial refinement with no ligand modelled (structure 37)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-04-02 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 127.629, 45.313, 83.198 |
| Unit cell angles | 90.00, 102.26, 90.00 |
Refinement procedure
| Resolution | 28.400 - 1.640 |
| R-factor | 0.1735 |
| Rwork | 0.172 |
| R-free | 0.20460 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 4ptb |
| RMSD bond length | 0.022 |
| RMSD bond angle | 1.926 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.400 | 28.400 | 1.680 |
| High resolution limit [Å] | 1.640 | 7.330 | 1.640 |
| Rmerge | 0.069 | 0.031 | 0.713 |
| Rmeas | 0.082 | 0.036 | 0.839 |
| Rpim | 0.044 | 0.019 | 0.439 |
| Total number of observations | 194111 | 2334 | 14377 |
| Number of reflections | 56227 | ||
| <I/σ(I)> | 11.5 | 40.5 | 1.7 |
| Completeness [%] | 98.0 | 97.3 | 96.8 |
| Redundancy | 3.5 | 3.4 | 3.5 |
| CC(1/2) | 0.998 | 0.998 | 0.672 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.1M MES pH 6.1 -- 20% PEG20K |
