5PVL
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 236)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 55.250, 56.408, 101.750 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 21.690 - 1.530 |
| R-factor | 0.1945 |
| Rwork | 0.193 |
| R-free | 0.22840 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.023 |
| RMSD bond angle | 2.023 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 21.690 | 21.690 | 1.600 |
| High resolution limit [Å] | 1.530 | 5.070 | 1.530 |
| Rmerge | 0.066 | 0.031 | 0.668 |
| Rmeas | 0.073 | 0.034 | 0.735 |
| Rpim | 0.030 | 0.013 | 0.302 |
| Total number of observations | 273222 | 9220 | 36013 |
| Number of reflections | 47904 | ||
| <I/σ(I)> | 13.3 | 39.6 | 2.7 |
| Completeness [%] | 98.5 | 98.7 | 99.4 |
| Redundancy | 5.7 | 6.3 | 5.7 |
| CC(1/2) | 0.999 | 0.999 | 0.650 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
