5PVK
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 235)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 55.063, 56.384, 101.567 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.030 - 1.580 |
| R-factor | 0.1851 |
| Rwork | 0.183 |
| R-free | 0.21780 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.024 |
| RMSD bond angle | 2.065 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.030 | 29.030 | 1.620 |
| High resolution limit [Å] | 1.580 | 7.060 | 1.580 |
| Rmerge | 0.052 | 0.016 | 0.889 |
| Rmeas | 0.057 | 0.018 | 0.967 |
| Rpim | 0.022 | 0.007 | 0.377 |
| Total number of observations | 289556 | 3589 | 19972 |
| Number of reflections | 44032 | ||
| <I/σ(I)> | 21.7 | 88.6 | 2.3 |
| Completeness [%] | 99.6 | 98.6 | 97.9 |
| Redundancy | 6.6 | 6.2 | 6.4 |
| CC(1/2) | 1.000 | 1.000 | 0.754 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
