5PVA
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 224)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-08-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.554, 56.598, 101.296 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.000 - 1.980 |
R-factor | 0.1865 |
Rwork | 0.184 |
R-free | 0.22670 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5amf |
RMSD bond length | 0.018 |
RMSD bond angle | 1.686 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.000 | 29.000 | 2.040 |
High resolution limit [Å] | 1.980 | 8.870 | 1.980 |
Rmerge | 0.088 | 0.016 | 0.920 |
Rmeas | 0.095 | 0.017 | 1.000 |
Rpim | 0.037 | 0.007 | 0.386 |
Total number of observations | 147166 | 1815 | 10334 |
Number of reflections | 22629 | ||
<I/σ(I)> | 17.9 | 74.8 | 2.2 |
Completeness [%] | 99.3 | 97.3 | 96.3 |
Redundancy | 6.5 | 6 | 6.4 |
CC(1/2) | 0.999 | 1.000 | 0.710 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |