5PTY
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 176)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 55.387, 56.553, 101.727 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.080 - 2.100 |
| R-factor | 0.1873 |
| Rwork | 0.185 |
| R-free | 0.22970 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.015 |
| RMSD bond angle | 1.574 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.6) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.080 | 29.080 | 2.150 |
| High resolution limit [Å] | 2.100 | 9.380 | 2.100 |
| Rmerge | 0.116 | 0.018 | 1.001 |
| Rmeas | 0.126 | 0.020 | 1.093 |
| Rpim | 0.049 | 0.008 | 0.433 |
| Total number of observations | 124010 | 1537 | 8473 |
| Number of reflections | 19322 | ||
| <I/σ(I)> | 15 | 66.7 | 2 |
| Completeness [%] | 99.7 | 97 | 98.4 |
| Redundancy | 6.4 | 5.9 | 6.1 |
| CC(1/2) | 0.998 | 1.000 | 0.800 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
