5PSK
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 128)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-08-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.328, 56.421, 101.731 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.440 - 1.380 |
R-factor | 0.1872 |
Rwork | 0.186 |
R-free | 0.21300 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5amf |
RMSD bond length | 0.025 |
RMSD bond angle | 2.202 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.6) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 21.440 | 21.440 | 1.440 |
High resolution limit [Å] | 1.380 | 4.980 | 1.380 |
Rmerge | 0.049 | 0.030 | 0.702 |
Rmeas | 0.054 | 0.032 | 0.763 |
Rpim | 0.021 | 0.013 | 0.294 |
Total number of observations | 399202 | 10365 | 43556 |
Number of reflections | 63586 | ||
<I/σ(I)> | 16.2 | 51.9 | 2.4 |
Completeness [%] | 96.4 | 98.6 | 92.2 |
Redundancy | 6.3 | 6.7 | 6.4 |
CC(1/2) | 0.999 | 0.999 | 0.679 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |