5PRY
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 105)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-08-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.067, 56.684, 102.036 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.160 - 1.800 |
R-factor | 0.2205 |
Rwork | 0.219 |
R-free | 0.24870 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5amf |
RMSD bond length | 0.019 |
RMSD bond angle | 1.786 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.6) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.160 | 29.160 | 1.850 |
High resolution limit [Å] | 1.800 | 8.040 | 1.800 |
Rmerge | 0.083 | 0.021 | 0.860 |
Rmeas | 0.090 | 0.023 | 0.932 |
Rpim | 0.035 | 0.009 | 0.354 |
Total number of observations | 200824 | 2429 | 15039 |
Number of reflections | 30841 | ||
<I/σ(I)> | 17.1 | 65.1 | 2.4 |
Completeness [%] | 99.6 | 98.1 | 98.2 |
Redundancy | 6.5 | 6 | 6.8 |
CC(1/2) | 0.999 | 0.999 | 0.806 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |