5PRM
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 94)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 56.108, 56.495, 101.613 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.050 - 3.580 |
| R-factor | 0.2799 |
| Rwork | 0.276 |
| R-free | 0.34070 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.011 |
| RMSD bond angle | 1.217 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.6) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.050 | 29.050 | 3.670 |
| High resolution limit [Å] | 3.580 | 16.010 | 3.580 |
| Rmerge | 0.128 | 0.037 | 0.256 |
| Rmeas | 0.144 | 0.042 | 0.300 |
| Rpim | 0.065 | 0.020 | 0.152 |
| Total number of observations | 21374 | 266 | 898 |
| Number of reflections | 3814 | ||
| <I/σ(I)> | 18.9 | 33.7 | 12 |
| Completeness [%] | 92.3 | 85.1 | 81.2 |
| Redundancy | 5.6 | 4.9 | 3.7 |
| CC(1/2) | 0.968 | 0.998 | 0.948 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
