5PD4
PanDDA analysis group deposition -- Crystal Structure of BAZ2B after initial refinement with no ligand modelled (structure 60)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-03-10 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 81.915, 96.456, 57.807 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.900 - 1.800 |
R-factor | 0.1784 |
Rwork | 0.177 |
R-free | 0.20370 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3g0l |
RMSD bond length | 0.023 |
RMSD bond angle | 1.928 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.29) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.900 | 28.900 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.053 | 0.025 | 0.830 |
Rmeas | 0.057 | 0.028 | 0.909 |
Rpim | 0.022 | 0.011 | 0.361 |
Total number of observations | 140160 | 1237 | 6933 |
Number of reflections | 21560 | ||
<I/σ(I)> | 17.7 | 53 | 2 |
Completeness [%] | 99.5 | 97.4 | 94.2 |
Redundancy | 6.5 | 6.1 | 5.8 |
CC(1/2) | 0.999 | 1.000 | 0.819 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 30% PEG600 -- 0.1M MES pH 6.0 |