5PD3
PanDDA analysis group deposition -- Crystal Structure of BAZ2B after initial refinement with no ligand modelled (structure 59)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-03-10 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 81.696, 96.763, 57.965 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.980 - 1.690 |
R-factor | 0.1921 |
Rwork | 0.191 |
R-free | 0.21810 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3g0l |
RMSD bond length | 0.028 |
RMSD bond angle | 2.215 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.29) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.980 | 28.980 | 1.720 |
High resolution limit [Å] | 1.690 | 8.780 | 1.690 |
Rmerge | 0.047 | 0.036 | 0.744 |
Rmeas | 0.052 | 0.040 | 0.820 |
Rpim | 0.020 | 0.016 | 0.338 |
Total number of observations | 168885 | 1330 | 7638 |
Number of reflections | 26068 | ||
<I/σ(I)> | 20.4 | 61.7 | 2.1 |
Completeness [%] | 99.7 | 97.6 | 96.7 |
Redundancy | 6.5 | 6.1 | 5.6 |
CC(1/2) | 0.999 | 0.997 | 0.850 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 30% PEG600 -- 0.1M MES pH 6.0 |