5P8U

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 363

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	BESSY BEAMLINE 14.1
Synchrotron site	BESSY
Beamline	14.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2013-12-14
Detector	DECTRIS PILATUS 6M
Wavelength(s)	0.918409
Spacegroup name	P 21 21 21
Unit cell lengths	45.377, 72.813, 104.386
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	42.421 - 1.440
R-factor	0.1406
Rwork	0.139
R-free	0.17280
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	4y5l
RMSD bond length	0.007
RMSD bond angle	1.150
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHASER (2.5.7)
Refinement software	PHENIX

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	45.377		1.530
High resolution limit [Å]	1.440	4.300	1.440
Rmerge	0.062	0.022	0.445
Rmeas	0.067	0.024	0.478
Total number of observations	457563
Number of reflections	63300	2583	10035
<I/σ(I)>	21.25	69.54	4.43
Completeness [%]	99.8	99.7	99.1
Redundancy	7.228
CC(1/2)	0.999	1.000	0.918

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	4.6	290	0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 363 with the SMILES code COC(=O)C1=CC(=NN1)C(C)C