5P7T
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 326
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-01-22 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.895 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.322, 73.111, 52.928 |
Unit cell angles | 90.00, 109.60, 90.00 |
Refinement procedure
Resolution | 22.552 - 1.459 |
R-factor | 0.1398 |
Rwork | 0.138 |
R-free | 0.17030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.007 |
RMSD bond angle | 1.169 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.696 | 1.550 | |
High resolution limit [Å] | 1.460 | 4.360 | 1.460 |
Rmerge | 0.068 | 0.020 | 0.651 |
Rmeas | 0.078 | 0.023 | 0.747 |
Total number of observations | 237132 | ||
Number of reflections | 56340 | 2177 | 8963 |
<I/σ(I)> | 16.21 | 57.63 | 2.24 |
Completeness [%] | 99.6 | 99.1 | 98.7 |
Redundancy | 4.208 | ||
CC(1/2) | 0.999 | 0.999 | 0.739 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 326 with the SMILES code CC1=CC2=CC(O)=CN2C(=O)[C@H]1C#N |