5P7B

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 308

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	BESSY BEAMLINE 14.3
Synchrotron site	BESSY
Beamline	14.3
Temperature [K]	100
Detector technology	CCD
Collection date	2014-01-22
Detector	MAR CCD 165 mm
Wavelength(s)	0.895
Spacegroup name	P 1 21 1
Unit cell lengths	45.307, 72.894, 52.891
Unit cell angles	90.00, 109.61, 90.00

Refinement procedure

Resolution	28.087 - 1.407
R-factor	0.1734
Rwork	0.172
R-free	0.20500
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	4y5l
RMSD bond length	0.008
RMSD bond angle	1.183
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHASER (2.5.7)
Refinement software	PHENIX

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	42.678		1.490
High resolution limit [Å]	1.410	4.200	1.410
Rmerge	0.082	0.034	0.465
Rmeas	0.094	0.039	0.531
Total number of observations	254236
Number of reflections	61147	2387	9588
<I/σ(I)>	13.16	32.57	3.19
Completeness [%]	97.3	98.1	94.8
Redundancy	4.157
CC(1/2)	0.997	0.997	0.840

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	4.6	290	0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 308 with the SMILES code COC1=CC2=C(C=C1OC)C(=O)CCS2