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5P6T

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 290

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-07-18
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.918409
Spacegroup nameP 1 21 1
Unit cell lengths45.251, 73.107, 52.776
Unit cell angles90.00, 109.53, 90.00
Refinement procedure
Resolution39.564 - 1.457
R-factor0.142
Rwork0.140
R-free0.17600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.148
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.1251.550
High resolution limit [Å]1.4604.3501.460
Rmerge0.0620.0350.442
Rmeas0.0730.0410.516
Total number of observations210631
Number of reflections5612021728860
<I/σ(I)>13.3333.373.4
Completeness [%]99.398.997.8
Redundancy3.753
CC(1/2)0.9980.9970.837
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 290 with the SMILES code NC(=N)SCC1=CC=C(Cl)C=C1

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