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5P65

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 266

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-07-18
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.251, 73.046, 52.778
Unit cell angles90.00, 109.50, 90.00
Refinement procedure
Resolution19.779 - 1.100
R-factor0.1294
Rwork0.129
R-free0.14150
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.006
RMSD bond angle1.194
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]19.7791.170
High resolution limit [Å]1.1003.2601.100
Rmerge0.0320.0130.482
Rmeas0.0370.0160.568
Total number of observations459168
Number of reflections127054507219588
<I/σ(I)>20.4880.442.7
Completeness [%]97.098.293
Redundancy3.613
CC(1/2)1.0001.0000.838
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 266 with the SMILES code CN(C)C1=CC=C(C=N1)C(O)=O

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