Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5P63

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 264

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-07-18
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.918409
Spacegroup nameP 21 21 21
Unit cell lengths45.295, 72.598, 104.178
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.429 - 1.199
R-factor0.148
Rwork0.147
R-free0.16620
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.183
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.3221.270
High resolution limit [Å]1.2003.5901.200
Rmerge0.1080.0810.500
Rmeas0.1180.0880.542
Total number of observations738698
Number of reflections108018434117173
<I/σ(I)>10.2519.83.43
Completeness [%]99.899.699.3
Redundancy6.838
CC(1/2)0.9950.9930.855
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 264 with the SMILES code O=C(NCC1CC1)C1=CC=C(C=C1)N1CCCC1=O

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon