5P5J
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 244
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-04-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918409 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.314, 73.139, 52.673 |
Unit cell angles | 90.00, 109.30, 90.00 |
Refinement procedure
Resolution | 42.768 - 1.169 |
R-factor | 0.1184 |
Rwork | 0.118 |
R-free | 0.13180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.006 |
RMSD bond angle | 1.211 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.768 | 1.240 | |
High resolution limit [Å] | 1.170 | 3.500 | 1.170 |
Rmerge | 0.035 | 0.024 | 0.184 |
Rmeas | 0.041 | 0.028 | 0.235 |
Total number of observations | 364605 | ||
Number of reflections | 103876 | 4137 | 12901 |
<I/σ(I)> | 18.7 | 51.98 | 3.98 |
Completeness [%] | 95.0 | 99 | 73.2 |
Redundancy | 3.51 | ||
CC(1/2) | 0.999 | 0.999 | 0.937 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 244 with the SMILES code FC1=CC=C(NC(=O)CNC(=O)NC2CCCC2)C=C1 |