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5P52

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 227

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2013-04-18
DetectorMAR CCD 165 mm
Wavelength(s)0.8944
Spacegroup nameP 1 21 1
Unit cell lengths45.342, 73.490, 53.026
Unit cell angles90.00, 109.56, 90.00
Refinement procedure
Resolution29.602 - 1.270
R-factor0.1353
Rwork0.134
R-free0.15790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.202
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7261.350
High resolution limit [Å]1.2703.8001.270
Rmerge0.0480.0230.483
Rmeas0.0550.0260.552
Total number of observations357018
Number of reflections84492328613403
<I/σ(I)>18.8256.383.22
Completeness [%]97.899.296.5
Redundancy4.225
CC(1/2)0.9990.9990.834
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 227 with the SMILES code OC(=O)C1=CC=C(CBr)C=C1

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PDB entries from 2024-09-04

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