5P4X
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 222
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.2 |
| Synchrotron site | BESSY |
| Beamline | 14.2 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2014-01-22 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 0.91841 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.358, 72.997, 52.765 |
| Unit cell angles | 90.00, 109.39, 90.00 |
Refinement procedure
| Resolution | 42.784 - 1.576 |
| R-factor | 0.1369 |
| Rwork | 0.135 |
| R-free | 0.17590 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.144 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.784 | 1.670 | |
| High resolution limit [Å] | 1.580 | 4.700 | 1.580 |
| Rmerge | 0.070 | 0.025 | 0.481 |
| Rmeas | 0.082 | 0.030 | 0.565 |
| Total number of observations | 166264 | ||
| Number of reflections | 44552 | 1712 | 7041 |
| <I/σ(I)> | 15.55 | 41.89 | 3.3 |
| Completeness [%] | 99.3 | 97.8 | 97.5 |
| Redundancy | 3.731 | ||
| CC(1/2) | 0.998 | 0.998 | 0.817 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 222 with the SMILES code O=C(NC1=CC=CC2=C1C=CC=N2)C1=CC=CN=C1 |






