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5P4X

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 222

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]100
Detector technologyCCD
Collection date2014-01-22
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.358, 72.997, 52.765
Unit cell angles90.00, 109.39, 90.00
Refinement procedure
Resolution42.784 - 1.576
R-factor0.1369
Rwork0.135
R-free0.17590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.008
RMSD bond angle1.144
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7841.670
High resolution limit [Å]1.5804.7001.580
Rmerge0.0700.0250.481
Rmeas0.0820.0300.565
Total number of observations166264
Number of reflections4455217127041
<I/σ(I)>15.5541.893.3
Completeness [%]99.397.897.5
Redundancy3.731
CC(1/2)0.9980.9980.817
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 222 with the SMILES code O=C(NC1=CC=CC2=C1C=CC=N2)C1=CC=CN=C1

221371

PDB entries from 2024-06-19

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