5P4H
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 206
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-18 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.8944 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.388, 72.875, 52.827 |
Unit cell angles | 90.00, 109.60, 90.00 |
Refinement procedure
Resolution | 26.835 - 1.448 |
R-factor | 0.1426 |
Rwork | 0.141 |
R-free | 0.17660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.007 |
RMSD bond angle | 1.170 |
Data reduction software | HKL-2000 |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.480 |
High resolution limit [Å] | 1.450 | 3.940 | 1.450 |
Rmerge | 0.078 | 0.027 | 0.476 |
Total number of observations | 199403 | ||
Number of reflections | 57009 | ||
<I/σ(I)> | 7.9 | ||
Completeness [%] | 99.2 | 95.1 | 99.9 |
Redundancy | 3.5 | 3.6 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 206 with the SMILES code NCC1=CC=C(O1)C(F)(F)F |