5P4H
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 206
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.3 |
| Synchrotron site | BESSY |
| Beamline | 14.3 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2013-04-18 |
| Detector | MAR CCD 165 mm |
| Wavelength(s) | 0.8944 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.388, 72.875, 52.827 |
| Unit cell angles | 90.00, 109.60, 90.00 |
Refinement procedure
| Resolution | 26.835 - 1.448 |
| R-factor | 0.1426 |
| Rwork | 0.141 |
| R-free | 0.17660 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.170 |
| Data reduction software | HKL-2000 |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 1.480 |
| High resolution limit [Å] | 1.450 | 3.940 | 1.450 |
| Rmerge | 0.078 | 0.027 | 0.476 |
| Total number of observations | 199403 | ||
| Number of reflections | 57009 | ||
| <I/σ(I)> | 7.9 | ||
| Completeness [%] | 99.2 | 95.1 | 99.9 |
| Redundancy | 3.5 | 3.6 | 3.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 206 with the SMILES code NCC1=CC=C(O1)C(F)(F)F |






