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5P4H

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 206

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2013-04-18
DetectorMAR CCD 165 mm
Wavelength(s)0.8944
Spacegroup nameP 1 21 1
Unit cell lengths45.388, 72.875, 52.827
Unit cell angles90.00, 109.60, 90.00
Refinement procedure
Resolution26.835 - 1.448
R-factor0.1426
Rwork0.141
R-free0.17660
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.170
Data reduction softwareHKL-2000
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.480
High resolution limit [Å]1.4503.9401.450
Rmerge0.0780.0270.476
Total number of observations199403
Number of reflections57009
<I/σ(I)>7.9
Completeness [%]99.295.199.9
Redundancy3.53.63.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 206 with the SMILES code NCC1=CC=C(O1)C(F)(F)F

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