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5P4G

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 205

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2013-04-18
DetectorMAR CCD 165 mm
Wavelength(s)0.8944
Spacegroup nameP 1 21 1
Unit cell lengths45.200, 72.860, 52.576
Unit cell angles90.00, 109.47, 90.00
Refinement procedure
Resolution29.355 - 1.159
R-factor0.1372
Rwork0.136
R-free0.15360
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.227
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.6151.230
High resolution limit [Å]1.1603.4701.160
Rmerge0.0610.0230.419
Rmeas0.0710.0260.511
Total number of observations435599
Number of reflections108943423115845
<I/σ(I)>17.6557.523.2
Completeness [%]98.099.688.5
Redundancy3.998
CC(1/2)0.9990.9990.826
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 205 with the SMILES code NC(=N)C1=CSC=C1

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PDB entries from 2024-09-04

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