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5P32

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 155

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2013-04-12
DetectorMAR CCD 165 mm
Wavelength(s)0.8944
Spacegroup nameP 1 21 1
Unit cell lengths45.229, 73.082, 52.596
Unit cell angles90.00, 109.33, 90.00
Refinement procedure
Resolution36.855 - 1.119
R-factor0.1337
Rwork0.133
R-free0.14980
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.006
RMSD bond angle1.200
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.6791.190
High resolution limit [Å]1.1203.3501.120
Rmerge0.0450.0210.453
Rmeas0.0520.0240.576
Total number of observations455091
Number of reflections117435472014396
<I/σ(I)>17.4360.322.4
Completeness [%]94.799.571.9
Redundancy3.875
CC(1/2)0.9990.9990.734
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 155 with the SMILES code O=C1NC(=O)C2=CC=CC=C2\C1=C\C1=CC=CS1

222036

PDB entries from 2024-07-03

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