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5P30

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 153

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]100
Detector technologyCCD
Collection date2013-01-23
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.298, 73.053, 52.676
Unit cell angles90.00, 109.27, 90.00
Refinement procedure
Resolution28.152 - 1.845
R-factor0.148
Rwork0.145
R-free0.20210
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.010
RMSD bond angle1.188
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7591.960
High resolution limit [Å]1.8505.5001.850
Rmerge0.1160.0370.487
Rmeas0.1320.0420.556
Total number of observations116624
Number of reflections2750710904251
<I/σ(I)>11.8731.623.38
Completeness [%]98.398.394.2
Redundancy4.239
CC(1/2)0.9950.9980.844
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 153 with the SMILES code CC(C)CN1NS(=O)(=O)C2=CC=CC=C2C1=O

222036

PDB entries from 2024-07-03

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