5P30
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 153
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.2 |
| Synchrotron site | BESSY |
| Beamline | 14.2 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2013-01-23 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 0.91841 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.298, 73.053, 52.676 |
| Unit cell angles | 90.00, 109.27, 90.00 |
Refinement procedure
| Resolution | 28.152 - 1.845 |
| R-factor | 0.148 |
| Rwork | 0.145 |
| R-free | 0.20210 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.188 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.759 | 1.960 | |
| High resolution limit [Å] | 1.850 | 5.500 | 1.850 |
| Rmerge | 0.116 | 0.037 | 0.487 |
| Rmeas | 0.132 | 0.042 | 0.556 |
| Total number of observations | 116624 | ||
| Number of reflections | 27507 | 1090 | 4251 |
| <I/σ(I)> | 11.87 | 31.62 | 3.38 |
| Completeness [%] | 98.3 | 98.3 | 94.2 |
| Redundancy | 4.239 | ||
| CC(1/2) | 0.995 | 0.998 | 0.844 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 153 with the SMILES code CC(C)CN1NS(=O)(=O)C2=CC=CC=C2C1=O |






