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5P2J

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 137

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]100
Detector technologyCCD
Collection date2013-01-23
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.268, 73.317, 52.801
Unit cell angles90.00, 109.32, 90.00
Refinement procedure
Resolution21.942 - 1.559
R-factor0.1438
Rwork0.142
R-free0.18230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.008
RMSD bond angle1.157
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7191.650
High resolution limit [Å]1.5604.6501.560
Rmerge0.0810.0280.618
Rmeas0.0930.0320.711
Total number of observations193060
Number of reflections4628017897358
<I/σ(I)>13.1341.642.41
Completeness [%]99.598.998.8
Redundancy4.171
CC(1/2)0.9980.9990.748
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 137 with the SMILES code ClC1=CC=C(C=C1)[C@@H](NC(=O)C1=CN=CC=N1)C1CC1

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