5P1F

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 98

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	BESSY BEAMLINE 14.1
Synchrotron site	BESSY
Beamline	14.1
Temperature [K]	100
Detector technology	CCD
Collection date	2012-11-16
Detector	MARMOSAIC 225 mm CCD
Wavelength(s)	0.91841
Spacegroup name	P 1 21 1
Unit cell lengths	45.301, 72.970, 52.606
Unit cell angles	90.00, 109.35, 90.00

Refinement procedure

Resolution	39.500 - 1.259
R-factor	0.1316
Rwork	0.131
R-free	0.15010
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	4y5l
RMSD bond length	0.007
RMSD bond angle	1.192
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHASER (2.5.7)
Refinement software	PHENIX

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	42.742		1.340
High resolution limit [Å]	1.260	3.770	1.260
Rmerge	0.048	0.015	0.540
Rmeas	0.056	0.018	0.634
Total number of observations	354523
Number of reflections	86535	3325	13502
<I/σ(I)>	18.14	67.07	2.29
Completeness [%]	99.2	99.6	96.3
Redundancy	4.096
CC(1/2)	0.999	1.000	0.769

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	4.6	290	0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 98 with the SMILES code OC(=O)C1=CC(Cl)=C(O)C(Cl)=C1