5OZL
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 32
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-07-17 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.895 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.046, 73.435, 52.579 |
Unit cell angles | 90.00, 109.07, 90.00 |
Refinement procedure
Resolution | 28.109 - 1.740 |
R-factor | 0.1417 |
Rwork | 0.139 |
R-free | 0.19470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.009 |
RMSD bond angle | 1.136 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.572 | 1.850 | |
High resolution limit [Å] | 1.740 | 5.190 | 1.740 |
Rmerge | 0.077 | 0.027 | 0.486 |
Rmeas | 0.088 | 0.031 | 0.555 |
Total number of observations | 140083 | ||
Number of reflections | 32831 | 1286 | 5186 |
<I/σ(I)> | 15.29 | 40.33 | 3.21 |
Completeness [%] | 98.6 | 98.5 | 97.3 |
Redundancy | 4.266 | ||
CC(1/2) | 0.998 | 0.999 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 32 with the SMILES code CCOC(=O)C1=CC=C(N)C=C1Cl |