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5OZL

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 32

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2015-07-17
DetectorMAR CCD 165 mm
Wavelength(s)0.895
Spacegroup nameP 1 21 1
Unit cell lengths45.046, 73.435, 52.579
Unit cell angles90.00, 109.07, 90.00
Refinement procedure
Resolution28.109 - 1.740
R-factor0.1417
Rwork0.139
R-free0.19470
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.009
RMSD bond angle1.136
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.5721.850
High resolution limit [Å]1.7405.1901.740
Rmerge0.0770.0270.486
Rmeas0.0880.0310.555
Total number of observations140083
Number of reflections3283112865186
<I/σ(I)>15.2940.333.21
Completeness [%]98.698.597.3
Redundancy4.266
CC(1/2)0.9980.9990.856
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 32 with the SMILES code CCOC(=O)C1=CC=C(N)C=C1Cl

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PDB entries from 2024-11-13

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