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5OZJ

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 30

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyCCD
Collection date2012-09-04
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.252, 73.238, 52.605
Unit cell angles90.00, 109.44, 90.00
Refinement procedure
Resolution29.461 - 1.489
R-factor0.1364
Rwork0.135
R-free0.16780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.174
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.6721.580
High resolution limit [Å]1.4904.4401.490
Rmerge0.0540.0170.398
Rmeas0.0620.0190.459
Total number of observations219965
Number of reflections5272120408351
<I/σ(I)>19.8362.223.35
Completeness [%]99.499.297.9
Redundancy4.172
CC(1/2)0.9991.0000.878
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 30 with the SMILES code CC1=NC2=CC=CC=C2C(=O)N1NC(=O)C1CC1

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