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5OZG

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 27

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyCCD
Collection date2012-09-04
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.357, 73.183, 52.957
Unit cell angles90.00, 109.85, 90.00
Refinement procedure
Resolution34.930 - 1.490
R-factor0.1304
Rwork0.129
R-free0.16130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.165
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.6611.580
High resolution limit [Å]1.4904.4501.490
Rmerge0.0570.0340.230
Rmeas0.0650.0390.265
Total number of observations221080
Number of reflections5307520488505
<I/σ(I)>17.1936.595.36
Completeness [%]99.699.199.3
Redundancy4.165
CC(1/2)0.9980.9980.946
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 27 with the SMILES code CCNC(=O)C1=CC=C(F)C(F)=C1F

222036

PDB entries from 2024-07-03

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